Latest update

2025-04-01

Data Source

The data used for this project is from Yang et al., 2019: Multi-omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency.

  • Table S2: Temporal Proteomic Data (0min, 30min, 1h, 6h, 12h, 24h, 36h, 48h, and 72h)
  • Table S3: Temporal Transcriptomic (RNA-Seq) Data (0min, 1h, 6h, 12h, 24h, 36h, 48h, and 72h)

For the purpuse of our project we realigned the count data for the transcriptomic data with the M11 mouse genome using STAR.

Proteome Data Head
UniprotID GeneID X0m X1h X6h X12h X24h X36h X48h X72h log2FC_0m_1h log2FC_1h_6h log2FC_6h_12h log2FC_12h_24h log2FC_24h_36h log2FC_36h_48h log2FC_48h_72h
Q8R3W2 0610009B22Rik 22.88820 22.58756 22.85770 22.71333 22.49104 22.28791 22.55330 22.90905 -0.3006400 0.2701394 -0.1443739 -0.22229103 -0.20312630 0.2653944 0.35574601
Q9DCS2 0610011F06Rik 25.81078 26.28141 26.05348 25.91008 25.43775 24.96838 24.84230 25.63992 0.4706273 -0.2279365 -0.1433905 -0.47233934 -0.46936564 -0.1260783 0.79762014
Q8BHG2 0610037L13Rik 28.65140 28.39190 28.52414 28.30400 28.25237 28.33117 28.45998 28.38369 -0.2595007 0.1322361 -0.2201394 -0.05162924 0.07879782 0.1288167 -0.07629738
V9GXF1 1110065P20Rik 24.46039 25.00402 24.59935 24.25717 24.35595 24.73614 24.76269 25.85162 0.5436275 -0.4046702 -0.3421763 0.09878239 0.38018522 0.0265473 1.08893786
Q8WUR0 1600014C10Rik 24.30800 23.75634 24.58228 25.11048 24.86278 25.11902 24.71790 23.50057 -0.5516615 0.8259393 0.5282067 -0.24770351 0.25624078 -0.4011161 -1.21733005
J3QMC0 1700003H04Rik 22.82848 24.14460 23.35124 23.62545 23.32869 23.17345 23.28715 NA 1.3161250 -0.7933624 0.2742035 -0.29675879 -0.15523247 0.1136942 NA
Transcriptome Data Head
original_id X0h_rep1 X0h_rep2 X1h_rep1 X1h_rep2 X6h_rep1 X6h_rep2 X12h_rep1 X12h_rep2 X24h_rep1 X24h_rep2 X36h_rep1 X36h_rep2 X48h_rep1 X48h_rep2 X72h_rep1 X72h_rep2 version ensembl_base gene_biotype mgi_symbol
ENSMUSG00000121438.1 486 535 599 526 971 975 790 801 941 847 886 581 414 629 99 161 1 ENSMUSG00000121438 lncRNA
ENSMUSG00000109644.3 41 32 60 44 62 45 101 84 112 110 98 97 31 36 41 41 3 ENSMUSG00000109644 lncRNA 0610005C13Rik
ENSMUSG00000108652.2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 ENSMUSG00000108652 lncRNA 0610006L08Rik
ENSMUSG00000086714.3 12 23 14 21 21 21 19 26 20 26 33 23 30 61 50 71 3 ENSMUSG00000086714 lncRNA 0610009E02Rik
ENSMUSG00000043644.6 49 34 69 66 38 34 53 41 56 62 62 43 41 66 103 91 6 ENSMUSG00000043644 lncRNA 0610009L18Rik
ENSMUSG00000020831.19 33 27 34 55 48 41 65 63 57 81 70 65 47 60 83 73 19 ENSMUSG00000020831 protein_coding 0610010K14Rik
ToD candidate genes
TF Prot-RNA-LFC-Ratio Over Time
RNA Binding Protein Target Motifs Enriched in ToD Candidates
ToD candidates carrying RBP motifs